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Inflammation
Inflammation is…
What we found out…
Come back soon when manuscript is accepted!
Note: you can recreate our methods as all data files are provided in the GitHub except the forums of interest JSON due to data being too large. We used the CaStLeS Bear services at University of Birmingham [7] to extract forum, and perform majority of analysis.
The computations described in this paper were performed using the University of Birmingham’s BlueBEAR HPC service, which provides a High Performance Computing service to the University’s research community. See http://www.birmingham.ac.uk/bear for more details.
References
[1] Richardson L. Beautiful Soup Documentation. 2007. http://mde.tw/wcm2021/downloads/2019_beautifulsoup_document.pdf.
[2] Huang K, Altosaar J, Ranganath R. Clinicalbert: Modeling clinical notes and predicting hospital readmission. arXiv preprint arXiv:1904.05342. 2019.
[3] Johnson AE, Pollard TJ, Shen L, Li-Wei HL, Feng M, Ghassemi M, Moody B, Szolovits P, Celi LA, Mark RG. MIMIC-III, a freely accessible critical care database. Scientific data. 2016 3(1):1-9.
[4] Rehurek R, Sojka P. Gensim–python framework for vector space modelling. NLP Centre, Faculty of Informatics, Masaryk University, Brno, Czech Republic. 2011 3(2).
[5] Pendleton SC. Combined Ontology for Inflammatory Diseases COID. Zenodo. 2021. https://doi.org/10.5281/zenodo.5524650.
[6] Pendleton SC, Slater LT, Karwath A, Gilbert RM, Davis N, Pesudovs K, Liu X, Denniston AK, Gkoutos GV, Braithwaite T. Development and application of the ocular immune-mediated inflammatory diseases ontology enhanced with synonyms from online patient support forum conversation. Computers in biology and medicine. 2021 135:104542.
[7] Thompson SJ, Thompson SE, Cazier JB. CaStLeS (Compute and Storage for the Life Sciences): a collection of compute and storage resources for supporting research at the University of Birmingham. Zenodo. 2019 Jun 20.